Bioinformatics & computational biology
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- Multiplex-GCN Predicts Clinically Actionable Tumor Microenvironment Subtypes in Pancreatic Cancer
- Neopep: Reinforcement Learning From Machine-Learned Force Field Energy for Non-Canonical Peptide Structure Prediction
- Benchmarking Large Language Models for Transcriptomic Data Analysis and Visualization: Multi-Model Workflow Evaluation
- Dimensionality Reduction for Cyclic Compositional Data
- GLOM TGITO: multiscale protein modelling and multiview landscape-guided sequence discovery
- Asking the Data: Conversational Interrogation of LC-MS/MS Proteomics Data Sets with an LLM Agent
- Best Practices for Pre-Processing Large-Scale ATAC-Seq Data: Why Epidemiological Studies Demand Greater Stringency
- BenchMHC: a reproducible framework for peptide-MHC presentation prediction
- ProtCell: a foundation model for single-cell proteomics
- Metric-driven Pre-acquisition Diagnostics for Automated Microscopy Ultraviolet Surface Excitation (MUSE)
- CATFISHR: integration of transcriptome and inferred CNV profiles for comprehensive malignant cell identification
- MPFIL: Multi-Level Protein Feature Integration for Predicting Mutation-Induced Protein-Protein Binding Affinity Changes
- CEP-IP with CMRF in SEA-AD Microglia: A Mitochondrial Co-expression Module Linked to Cognition
- Characterization of heterogeneous bioinformatics training needs in the AI era
- An evidence-governed agent harness for spatial transcriptomics prioritizes ICAM-1 as a target in lung fibrosis
- Mathematical AI Predicts 40% and 57% Influenza Vaccine Effectiveness Against H1N1 and H3N2, Respectively, for the 2026--2027 U.S. Season
- Evaluating the added value of sequence models in noncoding RNA assays: a baseline-aware framework
- Large-scale integrated single-cell analysis reveals molecular subtypes and microenvironmental remodeling in cutaneous T cell lymphoma
- Overcoming segmentation bottlenecks in brain tissue for spatial proteomic inference at population scale
- AI-guided discovery of natural pocket proteins for portable small-molecule sensing
- RiboDFM: Robust RNA sequence design using backbone-conditioned discrete flow matching
- Whole-genome sequencing reveals tumor T-cell infiltration associated with immunotherapy outcomes
- Data mining of global sequence datasets markedly expands known diversity within the Tobamovirus genus
- OmniRE-seq: A Dual-Method Framework for Decoding RNA Editing Dynamics in Disease and Therapy
- Projected Gradient Descent for Hallucination-Based Protein Binder Design