Bioinformatics & computational biology
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- Bridging the Modality Bottleneck in Pathology MIL through Molecularly Guided Feature Adaptation
- Agentic Literature Extraction Augments Targeted Protein Degradation Databases
- memVar: an integrated resource for interpreting human membrane protein variation in molecular and disease contexts
- Improving phosphoproteomic kinase activity inference by contextual refinement of Kinase Library relationships
- Benchmarking Statistical Methods for Differential Composition Analysis in Population-Scale Single-Cell Data
- RPI-Zero: Zero-shot RNA-Protein Interaction Prediction
- TRACE: a framework for traceable biomedical resource construction demonstrated through single-cell glaucoma data
- Multi-objective domain adaptation for pan-cancer transfer of pharmacogenomic drug response to patient tumours
- Clinical-Anchored Incremental Survival Learning: A Stability-Constrained Framework for Molecularly Enhanced Survival Prediction in Lung Adenocarcinoma
- Pharmacogenomics-guided cardiovascular therapy in low- and middle-income countries: A systematic review of barriers, equity gaps, and pathways to personalized medicine
- Explainable computational framework for subtype classification and biomarker identification in head and neck squamous cell carcinoma using machine learning
- Cross-cancer knowledge transfer for lymph node metastasis prediction: Applicability of an axillary lymph node-based deep learning model
- A protein language model for domain, functional site, and variant effect prediction
- Reconstruction of Cellular Trajectories with Biologically Interpretable States
- The Little Scientist: What Does the Scientific Method Buy an LLM Agent?
- FoldAbS: Repurposing the Protein Folding Model as a Foundation Encoder for Antibody Screening
- PartiDesign: A structure-sequence co-design paradigm for practical all-to-all biomolecules design
- CARTnet: Template-guided B-cell Epitope Prediction with Contact-aware Attention
- Autonomous generalizability auditing of scientific foundation models
- brisc: a multithreaded CPU toolkit for single-cell analysis
- HiFiTaxa: a reproducible analysis pipeline for full length 16S rRNA gene and ITS amplicon sequencing from PacBio reads
- Error-Controlled Discovery of Protein Interactions via Conformal Calibration
- Where single-cell foundation models help: a benchmark of annotation, perturbation and regulatory inference against simple baselines
- Representation-aware calibration enables statistically reliable protein structure search
- Evaluating the Identifiability of Temporal Delay and Response Attenuation in Endometrial Decidualization