Bioinformatics & computational biology
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- Missing by design: why genomic metadata must be captured at submission, not recovered from the literature
- gcat, its_a_scam: modular tools for single cell data processing and per-cellquality control
- XAMPGen: An Interpretable SI Pipeline For Novel Antimicrobial Peptide Discovery
- Single-cell geometry of drug responses across malignant glioma states
- All-Atom Structure Tokenizer: AtomLM-9b for Biomolecular Structure Prediction
- Rho: A Purpose-Driven Workspace for Human-AI Collaborative Analysis
- Peptorama: Structure creation and exploratory data analysis for non-ribosomal peptides
- Comparative Transcriptomic Analysis of Gene Expression Patterns in Neutrophils from Rheumatoid Arthritis and COVID-19
- MicrobeRT: A Framework and Suite of Fine-tuned Language Models for Genomic Sequences
- Optimiser Repairs for Living-Cell Self-Driving Laboratories: Performance and Redundancy under Experimental Constraints
- CloneVI: A deep generative model for deciphering the relationships between cell state and mitochondrial genotype
- NORMA 3.0: aesthetic and group-aware visualization and analysis of annotated biological networks
- Long read sequencing reveals changes in measured isoform structure and abundance due to RNA processing
- Unified cell segmentation for spatial transcriptomics via transcript reassignment
- Uncovering cross-signal interactions in single-cell and spatial omics
- TensorPLS: an R package for exploring molecular and temporal patterns in longitudinal omics data using PLS-DA
- PLATE: a global atlas of food metaplasmidomes
- SeCAT (Sequence Consensus Amplicon Trimming): a simulation-informed Nextflow pipeline for cross-study harmonisation of 16S rRNA metabarcoding datasets
- Neural RNA splicing models rely on reading frame information unavailable to the splicing machinery
- Sourmash accurately profiles strains from long-read metagenomes preserving gene content
- KDRD: assessing discovery replicability based on summary association statistics from a single study
- Marker-specific pixel attribution for single-cell protein quantification with PixAQ
- RAPTORGraph: graph-based pathway modeling for causal discovery in single-cell perturbations
- A Bayesian Optimized Biquad Filter-Burg Model for Real-Time EEG Phase Estimation
- Maternal Anxiety During Pregnancy and Offspring Information Processing Across Development: A Theory-Guided Predictive-Processing Reappraisal of Two Longitudinal Cohorts