Bioinformatics & computational biology
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- Contrastive Learning Improves Generalization on M2OR Olfactory Binding Dataset
- Virtual dynamics of spatiotemporal single-cell interactions
- U-statistics-based Pairwise Discordance Regression for Joint Mean-Variability Inference in Longitudinal Studies with Missing Data
- Plate design confounds donor variation and model evaluation in single-cell perturbation screens
- Learning interpretable compositional features associated with continuous covariates
- Application of metagenomic sequencing to improve sessile serrated lesion detection using the faecal immunochemical test
- LinearRaccess: linear-time approximation of RNA accessibility without base-pair span limits
- RPFace: From biased structural benchmarks to generalizable RNA-protein interface prediction
- scDisentangle: sequential disentanglement for single-cell perturbation response prediction
- Automahout: an autonomous image analysis system for cell tracking
- Learning Strand-Equivariant Tokenizations of DNA with MirrorDNA
- European LD proxies lose tagging for 43% of GWAS leads in the African panel: a chromosome 22 analysis with SwiftLD, an 826-fold faster, byte-identical vcftools LD
- Language-guided domain adaptation improves protein sequence rep-resentations for antimicrobial resistance analysis
- Protify: A Benchmarking Platform Revealing Task Dependence and Homology Leakage in Protein Language Model Evaluation
- Dated public evidence and known genes for retrospective evaluation of gene prioritization
- SPECHTacle: An Efficient Detection and Visualization of Cell Specific Regulation in Single Cell-Based Experiments Using a Novel Combinatorial Computational Tool
- Provenance-aware handling of identical dengue genome records alters inferred envelope-protein variation in Bangladesh DENV-3
- TIGRdisco: a tool for the discovery of TIGR arrays and TIGR-associated Tas proteins from nucleotide sequences
- Harnessing catalytic knowledge to guide enzyme discovery and evolution with AlphaEnzyme
- Earl Grey ParTEA: scalable, consistent transposable element annotation from pangenomes to deep phylogenetic scopes
- FeatureMAP enables network-guided interpretation of untargeted metabolomics
- MorphoProt: RNA-Conditioned Integration of Multiscale Histology for Spatial Protein Inference
- Quantitative Spatial Analysis of Matrix Remodelling in Wounds Using Digital Pathology and Fractal Analysis
- A low-rank decoder bottleneck bounds reliability in foundation-model perturbation prediction
- CellCanon: An Agentic Cellular World Model for Prediction, Explanation, and Observation-Driven Updating