Bioinformatics & computational biology
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- Branch-Wise Regularization for Heterogeneous GNN-Based MALDI-TOF AMR Prediction with Biomarker-Consensus Edges
- Robust Cooperative Learning for Multiview Regression via Soft-IPOD
- Evaluating Clustering and Imputation Approaches for Multivariate Longitudinal Clinical Data Using a Real-World eCDF-Copula Resampling Framework
- CycloCross: Adversarial single-cell RNA-seq data translation across species
- CHACAM: a cell-cell interaction-guided hierarchical attention model for high-precision cell identity annotation of scRNA-seq data in early C. elegans embryogenesis
- Chikungunya Virus Infection of Monocytes Generates a Persistent Macrophage Reservoir That Promotes IFN-π/IL-27-STAT1- and NF-κB-Driven Chronic Arthritis
- Bridging the gap between omics and structural data: A framework for interpreting protein-RNA interaction specificity
- Biological rationales from language models enable leakage-resistant forecasts of target-indication success
- Mediation Analysis with Compositional Exposures
- Pair-complete structural gating enables Pareto optimization of de novo cyclic peptides with preserved binding geometry and improved developability
- HipHap: Haplotype Assignment and Confidence Scoring for Diploid Reference Genomes
- Bayesian bacterial GWAS model reveals threshold-dependent genetic changes in antimicrobial resistance phenotypes
- A low-annotation-budget PubMedBERT classifier for chondrogenesis regulator discovery via active learning
- Platform-specific count-matrix preprocessing workflows for spatial transcriptomics data analysis
- Sum-h2, enabling genetic discovery for deep learning-derived phenotypes through a fast evaluation framework and arena of performance
- Deciphering the gene-centric spatial dynamics across tissue and time with GeneSPOT
- ScProteoAgent enables natural-language-driven single-cell proteomics analysis and interpretation
- MIMOSA: Guiding De Novo Antibody Design with Natural Interaction Fingerprints
- Detecting Random Mutations in 16S rRNA Sequences
- DECIPHER integrates disentangled representation learning and prototype-based cell-type deconvolution across molecular modalities
- An agentic AI environment to support biomedical research in collaborative academic environments
- EpiZoo: a DNA sequence-aware foundation model for cross-species single-cell epigenomics
- PerturbBridge: Conditional Latent Schr\"{o}dinger Bridge for Single-Cell Perturbation Prediction
- Fluoxetine Hydrochloride Treatment Influences Site-Specific ADAR Editing and Transcriptome Regulation in Arid1b +/- Mice
- De novo design of small cyclic peptide inhibitors from non-canonical amino acids by cofolding-guided search