Bioinformatics & computational biology
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- OmicsResonance: An LLM-assisted cloud ecosystem for interactiveand reproducible single-cell transcriptomic analysis
- ProteoScopeR: A Shiny Workflow for Method Comparison and Reproducible Quantitative Proteomics Analysis
- AnewDDE: An Agentic Drug Discovery Engine for Biomolecular Interaction Modelling and Closed-Loop Design
- Computational Framework for Identifying Ion Channel Mutation-Compensating Interventions
- DIRECTION-AWARE INTEGRATED BIOINFORMATICS ANALYSIS REVEALS CONCORDANT AND DISCORDANT MOLECULAR SIGNATURES LINKING TYPE 2 DIABETES MELLITUS AND POLYCYSTIC OVARY SYNDROME
- MCseg: AI agent-guided workflow search for no-code cell segmentation and transcript attribution in spatial transcriptomics
- In-Silico Thermodynamic and Structural Profiling of Bacterial SoxB Thiohydrolase: Evaluating the Substrate Accommodation of Circular Potassium Thiosulfate in Sulfur-Deficient Alkaline Soils
- AetherXeno: an allele-resolved receptor-occupancy atlas for regulatory pharmacogenomics
- MERFISHEYES: Web-based Visualization and Sharing Platform for Single-cell and Single-molecule Spatial Transcriptomics
- Dynamic Changes in the Urinary Proteome of Normal Pregnant Mice Carrying Phenylketonuria-Affected Fetuses
- baltic: the Backronymed Adaptable Lightweight Tree vIsualisation Code
- Predictive Modeling of Cancer Cell Growth Kinetics with Machine Learning
- Biologically Informed Multi-Omics Integration Reveals Clinically Meaningful Patient Representations in Acute Myeloid Leukemia
- sfate: Schur-free, target-conditioned absorption probabilities for scalable single-cell fate analysis
- Cell-Lens: Advancing LLM Reasoning at Single-Cell Resolution
- Surrogate Gradients for Gradient-Based Parameter Estimation in Simplified Neuron Models
- nf-rare-var-assoc: a comprehensive genetic association pipeline with rich QC
- Multi-vector retrieval enables residue-resolved prediction of protein partners by ColBERT-PPI
- PoLoCo: A reproducible pooled low-coverage workflow for draft genome assembly and allele frequency analysis from ethanol-preserved small non-model invertebrates
- MetaCarto: biologically faithful automatic layout for genome-scale metabolic maps
- A closed-loop language-model agent for target-specific multi-objective hit-to-lead optimization
- ARSA: an autonomous research scientist for target nomination in Alzheimer's disease and related dementias
- Make it so: Rapid and affordable plasmid sequencing on ONT platforms with PICARD-seq
- A Comparative Benchmark of Biomedical Language Models for Concept Normalization from Real-World Text
- Reconstructed holograms and explanation-aware evaluation for low-cost computational pollen analysis in veterinary cytology