Bioinformatics & computational biology
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- Experimental Design for Controller Selection in Synthetic Biology
- A Digital Twin for Individualized Treatment Effects of Non-Invasive Respiratory Support Strategies (DINIRS)
- DBCLS BioHackathon 2026 report: QPX: Pathway analysis environment for non-model organisms
- DBCLS BioHackathon 2026 report: Open, Reproducible Extraction of Data-Entity References from the Biomedical Literature – with Entry-Level Resolution via Identifiers.org / TogoID
- New genomic and transposable element annotation of the microsporidian parasite Anncaliia algerae
- EHR2Trace: Auditable EHR Data Infrastructure for Patient World Models and Clinical Agents
- From mice to humans: A multi-omic predictive framework for translational immunology
- Resolving power as a measure of protein stability prediction
- Putative Cyclospora cayetanensis detection in wastewater metagenomic datasets
- A Context-Aware 14-3-3 Binding Predictor Enabled by Data Augmentation, Multi-Scale Biological Features, and Protein Language Model Embeddings
- External Evaluation of Multi-Omics Prognostic Models Across TCGA-BRCA and METABRIC: Transportability, Stability, and Incremental Performance
- CardioChrom Reconstructs the Human Cardiac Virtual Epigenome from Single-Nucleus Transcriptomes
- ATACofthesnake: A scalable framework for analyzing multifactorial and time course chromatin accessibility data
- Local structural preference maps encode transferable protein-interface energetics
- A Statistical Guideline for Analyzing Repeated-Measures Proteomics Data
- ASOFormer: a Transformer-based model for predicting antisense oligonucleotide efficacy to support therapeutic candidate prioritization
- Boltz2-Notebook: An Interactive Google Colab Platform for Diffusion-Based Biomolecular Structure and Binding Affinity Prediction using the Boltz2 model.
- MoTRUST: adaptive semantic protection for mosaic single-cell integration and molecular recovery
- NeoToxPred: a fine-tuned protein language model with orthologous and length-stratified negative controls for robust toxicity classification
- CycDelta: Multimodal Residue-Graph Learning of Permeability Changes in Cyclic Peptides
- Phylogenetic parallelograms: visual comparison of discordant phylogenetic trees
- Systematic discovery of protein kinase-like domains reveals diverse evolutionary strategies in the human oral microbiome
- Phase Separation Potential of Marsupial RSX RNA Reveals Convergent Evolution of X-Chromosome Inactivation Mechanisms
- Selective depletion of upper-layer somatostatin interneuron subtypes in schizophrenia
- DeepSCENIC: transfer learning from sequence-to-function models enables causal gene regulatory network inference