Bioinformatics & computational biology
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- Trail systems self-organize through individual route optimization
- Stochastic gene expression drives state switching and phenotypic heterogeneity in RNA repair
- Novel genes and polymorphisms in human immunoglobulin light chains across diverse populations
- A Plasmodium knowlesi A1-H.1 transcriptome time course focusing on the late asexual blood stages
- Sex and educational inequalities across functional ability trajectories in Chile: A sequence analysis of a 17-year national panel
- Knowledge gap in vertebrate genetic diversity in a northern remanent of neotropical rainforest
- Ontologizer 3: a cross-platform desktop application for frequentist and Bayesian GO enrichment analysis
- Rp-Bp and the Ribotools box for translatome profiling
- Omics-scale decoding of protein N-glycosylation using protein language model embeddings
- Disentangling Context-Specific Alzheimer's Disease Progression Signatures through an Explainable AI Framework
- Discovering Prognostic Risk Strata and Heterogeneous Progression Routes from Cross-Sectional Survival Data
- Generalizable virtual staining from histopathology to spatial proteomics across biological scales
- AlphaFold 3 Prediction Accuracy and Reliability across RNA Structures and Protein-RNA Interfaces
- Context, not contradiction: a pan-cancer framework for conforming and nonconforming co-expression programmes
- vafSOMA: Detecting cell-layer-fixed somatic mutations in plants
- NBDC Data Tools: Building Analysis-ready Datasets From ABCD and HBCD Releases in R and Python
- Genome-scale metabolic models reveal phylogenetic conservation of amino acid fermentation-linked metabolic traits in soil bacteria
- scPCIP: cross-species annotation of plant cell types with conserved gene programs
- Spectral Adaptive Repositioning for Flow-Based Single-Cell Perturbation Modeling
- BioTrajX: evaluating biological plausibility in single-cell trajectory inference
- Model-Agnostic Decomposition of the Difference in Mean Response Between Two Groups via Game-Theoretic Attribution with Minimum-Switching-Distortion Coupling
- Visualization and Characterization of Gene Group Distribution Patterns Across Genomes
- One Mistake, Three Layers: Persistence Rules Under Depth Correlation
- BEND 2.0: Benchmarking the Capabilities Needed to Design DNA
- Resolving how genetic perturbations act through gene regulatory paths