Bioinformatics & computational biology
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- Uncertainty-Aware Model Selection with a Calibrated Probability-Generating-Function-Based Bayesian Information Criterion
- Empirical Estimation of Ambient Contamination in Combinatorial Single-Cell Methods Using Multi-Reference Mapping
- ML4SD: Leveraging Machine Learning and High-Throughput Search Algorithms for an Iterative Growth-Coupled Design Innovation
- A Turing-Style Test for In-Silico Antibodies: How Sampling Mode Makes WGAN-GP Beat VAE in the Wet Lab
- stably: error-controlled stability selection for biomarker panel discovery
- Calibrated structural homology transfer yields putative molecular functions for domains of unknown function in four model proteomes
- nanorepertoire: an end-to-end Nextflow pipeline for nanobody repertoire analysis
- AlphaPeptTools: scverse-native analysis of mass spectrometry-based proteomics
- VARION: A Network Propagation Framework for Individual Patient Somatic Mutation Interpretation in Cancer Molecular Subtyping
- MAP: a comprehensive pipeline for mobilome annotation and cargo gene characterisation in prokaryotic (meta)genomic assemblies
- Automated Volumetric Segmentation of Microaneurysms on OCT Using Artificial Intelligence
- Same Encoder, Different Winner: A Paired-View Framework for Cell Painting Encoder Evaluation
- Perturbational Validity for Foundation Models of Brain Dynamics: A Controlled Proof-of-Principle Simulation
- Audiovisual diarization of overlapping click trains in sperm whale (Physeter macrocephalus) vocal sparring using a three-hydrophone array
- State-specific respiratory signatures for affective and stress recognition: Interpretable respiratory markers, autocorrelation lags, and compact CNN models
- Diffusion learning reveals viable parameter manifolds and compensation geometry in biological dynamical systems
- Surrogate modeling based on computational fluid dynamics for predicting the capsizing moment in a coupled shiplift system
- From gut to pancreas: Shared genetic susceptibility and biological convergence in acute pancreatitis and Crohn’s disease
- A bioinformatic single-cell and structure-informed framework identifies a baicalin–CA2–keratinocyte state axis in atopic dermatitis
- Dual-domain self-supervised feature alignment via spectral–spatial representation learning for deepfake anomaly detection
- GenBank mining reveals novel insights into Rhizobium phylogeny: Identical 16S rRNA sequences are mainly uncoupled from species designation, host plant, and geographic origin: How this search suggested the definition of a direct ‘microbial h-index’
- Structural comparison of homologous protein-RNA interfaces reveals widespread overall conservation contrasted with versatility in polar contacts
- Archaic ancestry inference in imputed ancient human genomes
- Incomplete references leave bulk deconvolution targets non-identifiable, but identification has a computable precision price
- Rsearch: An R interface to VSEARCH supporting visualization and parameter tuning