Bioinformatics & computational biology
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- Edi-Set-Flow: detecting differential RNA-editing at scale
- A validation approach for RNA structures based on deep-learning 3D-structure predictions
- Aging reshapes cardiac extravascular leukocyte transcription through bidirectional remodeling during LPS-induced endotoxemia
- Continuous Topological Accessibility (RFA) as a 3D-Aware GRN Filter: Anticorrelation with eQTL and No Prediction of ΔRNA
- Res ipSAE adhuc loquuntur: What the directionality of predicted aligned error in cofolding models can tell us about scoring diverse molecular complexes
- From FAIR to AI-FAIR Metadata-First Infrastructure for AI-Enabled Science
- Coupling cellular trajectories and RNA kinetics on continuous expression manifolds with ManifoldVelo
- HistoTx: Early fusion of H&E images and spatial transcriptomics at varying spatial transcriptomics resolution with self-supervised learning
- A Scientific Claim Stability Framework for Evaluating MRI Morphometry Pipelines
- Attribution-based diagnostics for single-cell foundation models
- The DynaCell Evaluation Suite for Dynamic 3D Virtual Staining of Live Cells
- When perfect is a warning: explanations expose shortcuts that accuracy hides in cancer gene-expression classifiers
- Knockdown of a regulatory barcode shifts macrophage polarization destination from M1 to M2 and increases pathogen burden upon S. aureus infection
- Quantifying microbial fitness in high-throughput experiments
- Recurrent enhancer-promoter interactions across samples
- A mucosal barrier injury related six gene transcriptomic signature associated with ulcerative colitis using machine learning and public transcriptomic data
- Comparative transcriptomic responses of tomato to Xanthomonas strains isolated from different hosts
- Identification of Endoplasmic reticulum Homeostasis-associated diagnostic biomarkers for Sarcopenia through integrated Bioinformatics and Experimental Validation
- Baltic Sea microbial cohorts exhibit catabolic specialization and anabolic interdependencies across environmental gradients
- Role of METTL6 in gastric cancer: diagnostic, prognostic, and functional implications
- Ion regulatory mechanisms supporting hypersaline tolerance in the coastal rock pool mosquito Aedes togoi
- Multi-scale hybrid correction of noisy long reads
- Adaptive gating-based fusion of sequential and local features for predicting drug-drug interactions
- LKMHCpan: Transformer-optimized HLA-I pseudo-sequences enhance neoantigen prediction for immunotherapy
- Morpheus.AI: agents autonomously generate, execute and refine virtual tissue models