Bioinformatics & computational biology
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- Heterogeneous epigenetic regulatory patterns link mammalian aging, development, and mortality
- ImmuneLens: linking transcriptional states and TCR clonotypes through disentangled multimodal learning
- Isocall enables scalable transcript identification from long-read RNA-sequencing data
- CIDER: detecting changes in gene regulatory networks that are associated with changes in phenotype
- The Shape of Biological Metadata: Measuring Repository Richness with Entity-Based NLP Metrics
- GPCR Evolution Database
- PlantLRR-PRR:A Reproducible Annotation Pipeline Reveals Contrasting Evolution of Developmental and Defense Receptor-Like Proteins in Tomato
- Unlabeled Echoes: Pseudo-Labels and Genus-Aware Smoothing for Bat Call Recognition
- PHAROS: turning single-cell perturbation models into target-directed drug-combination screens
- When Metabolism Became Messaging: The Stepwise Evolution of the GABAergic Signaling System
- Benchmarking long-read RNA sequencing for de novo transcriptome assembly in non-model plant species: insights from Moricandia arvensis
- PhenoMapR: scalable mapping of sample phenotypes to single-cell, spatial, and bulk transcriptomics data
- TAPAS: Learned integration of AlphaFold3 confidence and geometric features for TCR-pMHC binding prediction
- Agent-driven Model Development for RNA 3D Structure Prediction
- Protein Design Viz (PDV): lightweight protein structure visualization studio with validated quantitative analytics and antibody-specific toolkit
- Spatially guided translation from histology images to transcriptomic profiles using foundation model-driven contrastive learning
- ForceFlowAb: physics-aware mixture-of-experts flow matching model for antibody CDRs design
- TransBind2: Improving Transcription Factor-DNA Binding Prediction with Multimodal Data and Bidirectional Cross Attention
- HARIBOSS++: An Integrated Platform for RNA-Targeted Drug Design
- Matched full-UDG and non-UDG ancient DNA libraries reveal trade-offs in post-mortem damage correction for imputation and kinship inference
- A Framework for Quantifying DNA Methylation Heterogeneity and Detecting Co-methylated loci from Native Nanopore Sequencing
- Advancing long-read metagenomic binning via single-copy-gene guided contrastive learning
- Independent benchmark of H&E-based gene expression prediction in skin
- A Unified Structure-Based Deep-Learning Framework for High-Throughput Screening of Protein-Binding RNAs
- EukaUTR: a foundation model for functional modelling and design of eukaryotic 3' UTRs