Bioinformatics & computational biology
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- Deep-Learning Algorithm for Indeterminate Thyroid Nodules: Comparison and Combination with Molecular Testing
- AcupunctureBench: A Multimodal Benchmark for Evaluating Generative Models in the Acupuncture Domain
- AgentCount: An Agentic Workflow for Traceable Colony Counting and Insight Generation from Agar Plate Images
- A System One Approach to General Protein Evolution
- OncoSpot enables benchmarking of cancer spatial transcriptomics methods across tumor evolutionary modes
- Deterministic DNA-first discovery reveals recurrent genomic architectures
- SQANTI-evidence: isoform-resolved, evidence-tiered structural annotation of unannotated genomes from long-read RNA-seq
- An end-to-end in silico framework for truth-based validation and regression testing of clinical genome sequencing pipelines, from simulated reads to reportable findings
- The Segmentome: a novel representation of the DNA methylome identified by a Bayesian HMM framework
- Layer-Specific Source-Anchored Transfer Learning for Multi-Omics Survival Prediction in Younger Breast Cancer Patients
- Decoding Cell-type Specific Gene Regulation with CellReg3D by Integrating DNA Large Language Models and 3D Genome Structure
- GOParsimony: parsimonious saltation across the Gene Ontology digraph for efficient functional annotation
- A deep genetic structure phylogenomically frames the closest algal relatives of land plants
- Development and cross-cohort evaluation of a multimodal deep-learning model for ER, PR and HER2 status classification in breast cancer
- Sequential syntax of EEG microstates captures the temporal dynamics of inhibitory control
- irAEGIS: Pathway-guided interpretable prediction of immune-related adverse events
- Comparative Strategies for Handling Imbalanced QSAR Regression: A Case Study on hERG Activity Prediction
- Stand-In Effects and Pooling Amplification: Design-Based Tests of Whether Biological World Models Use Actions
- Cell lines that share a well are not independent observations in the Tahoe-100M drug screen
- Accurate automated photo-identification of Near Eastern and European fire salamanders
- From Tool State to Scientific Action: Auditing Decision Provenance in Biomedical Research Agents
- FACET: Feasibility-Automaton Complete Enumeration and Truncation-Free Scoring of Molecular Formulas from MS/MS
- Can agents reliably design therapeutic antibodies?
- Governing Equations of Human Sleep Macro-Structure:Symbolic Discovery from 1,106 Nights
- FoXSight: Facilitating Computational Hit Identification in Crystallographic Fragment Screening Experiments