Skip to content
DraconiticResearch
Search Sources API
201,818 studies31 sourcesUpdated 18 min ago
Peer-reviewedLicence not statedNature Genetics

Decoding common and rare noncoding variant effects across cellular and developmental contexts

  • Andrew R. Marderstein1,2
  • Soumya Kundu3,4
  • Evin M. Padhi5
  • Salil Deshpande4,6
  • Austin Wang3,4
  • Esther Robb3,4
  • Ying Sun5
  • Chang Min Yun7
  • Diego A. Pomales-Matos4
  • Yilin Xie5
  • Serena H. Chang8
  • Iris M. Chin8
7 more authors
  • Aayushi J Shah8
  • Zachary A. Gardell8
  • M. Ryan Corces9,10,8
  • Daniel C. Nachun5
  • Selin Jessa4
  • Anshul Bharat Kundaje11,12
  • Stephen B. Montgomery13,14,15
15 affiliations
  1. 1Clinical Genetics Service, Memorial Sloan Kettering Cancer Center, New York, NY, USA. [email protected]
  2. 2Department of Pathology, Stanford University, Stanford, CA, USA. [email protected]
  3. 3Department of Computer Science, Stanford University, Stanford, CA, USA
  4. 4Department of Genetics, Stanford University, Stanford, CA, USA
  5. 5Department of Pathology, Stanford University, Stanford, CA, USA
  6. 6Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
  7. 7Department of Chemical Engineering, Stanford University, Stanford, CA, USA
  8. 8Gladstone Institute of Neurological Disease, Gladstone Institutes, San Francisco, CA, USA
  9. 9Department of Neurology, University of California, San Francisco, San Francisco, CA, USA
  10. 10Gladstone Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA, USA
  11. 11Department of Computer Science, Stanford University, Stanford, CA, USA. [email protected]
  12. 12Department of Genetics, Stanford University, Stanford, CA, USA. [email protected]
  13. 13Department of Biomedical Data Science, Stanford University, Stanford, CA, USA. [email protected]
  14. 14Department of Genetics, Stanford University, Stanford, CA, USA. [email protected]
  15. 15Department of Pathology, Stanford University, Stanford, CA, USA. [email protected]
Open at sourcePDFDOICite

Related

  1. Decoding cellular vulnerabilities for interpretable drug response prediction
    Briefings in bioinformaticsPeer-reviewedCC BYFull textMolecular biology & gene regulationEurope PMC
  2. Predicting cellular responses to perturbation across diverse contexts with State
    Abhinav Adduri, Dhruv Gautam, Beatrice Bevilacqua +29
    CellPeer-reviewedCC BY154 citedMolecular biology & gene regulationOpenAlex
  3. Decoding sequence determinants of gene expression in diverse cellular and disease states
    Avantika Lal, Alexander Karollus, Laura M. Gunsalus +13
    Nature MethodsPeer-reviewedLicence not stated32 citedMolecular biology & gene regulationOpenAlex
  4. A B1 SINE element within the mouse Malat1 long noncoding RNA acts as an internal ribosome entry site mediating micropeptide translation
    Wen Xiao, Tanja Hann, Zion Perry +5
    Science AdvancesPeer-reviewedPublisher termsFull textMolecular biology & gene regulationCrossrefEurope PMC
  5. Pumilio proteins license viral noncoding RNA engagement with target mRNAs
    C. Gorbea, D. Cazalla
    bioRxivPreprintCC BYFull textMolecular biology & gene regulationbioRxiv

Cite

BibTeXRIS
BibTeX
@article{marderstein2026decoding,
  title = {{Decoding common and rare noncoding variant effects across cellular and developmental contexts}},
  author = {Andrew R. Marderstein and Soumya Kundu and Evin M. Padhi and Salil Deshpande and Austin Wang and Esther Robb and Ying Sun and Chang Min Yun and Diego A. Pomales-Matos and Yilin Xie and Serena H. Chang and Iris M. Chin and Aayushi J Shah and Zachary A. Gardell and M. Ryan Corces and Daniel C. Nachun and Selin Jessa and Anshul Bharat Kundaje and Stephen B. Montgomery},
  journal = {Nature Genetics},
  year = {2026},
  month = jun,
  doi = {10.1038/s41588-026-02619-6},
  url = {https://doi.org/10.1101/2025.02.18.638922},
}
RIS
TY  - JOUR
TI  - Decoding common and rare noncoding variant effects across cellular and developmental contexts
AU  - Andrew R. Marderstein
AU  - Soumya Kundu
AU  - Evin M. Padhi
AU  - Salil Deshpande
AU  - Austin Wang
AU  - Esther Robb
AU  - Ying Sun
AU  - Chang Min Yun
AU  - Diego A. Pomales-Matos
AU  - Yilin Xie
AU  - Serena H. Chang
AU  - Iris M. Chin
AU  - Aayushi J Shah
AU  - Zachary A. Gardell
AU  - M. Ryan Corces
AU  - Daniel C. Nachun
AU  - Selin Jessa
AU  - Anshul Bharat Kundaje
AU  - Stephen B. Montgomery
PY  - 2026
DA  - 2026/06/15
JO  - Nature Genetics
DO  - 10.1038/s41588-026-02619-6
UR  - https://doi.org/10.1101/2025.02.18.638922
SN  - 1061-4036
SN  - 1546-1718
ER  -