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Biophysics

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1,034 studies

  1. Synapsin-1 and actin form ordered nanoscale assemblies
    D. Mansour, R. Chowdhury, A. Chandrasekaran +9
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  2. Hessian Matching for Machine-Learned Coarse-Grained Molecular Dynamics
    Sanya Murdeshwar, Sanjit Shashi, Kevin Bachelor +2
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  3. Discriminating betacoronavirus receptor usage across subgenera using protein structure prediction and molecular dynamics
    S. S. Garimella, G. Lauro, V. Peddamallu +5
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  4. Multiphysics Simulation Framework for Continuous Ion Transport and Energetics in Atmospheric Pressure Interfaces
    Yihui Yan, Jozef Lengyel, Frederic Rosu +1
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  5. Monitoring intramolecular dynamics across two regions of the mouse prion protein during misfolding and oligomerization using fluorescence correlation spectroscopy
    P. Kumari
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  6. Combining CHARMM36m with OPC water improves accuracy
    N. Kozlowski, G. Nagy, C. F. Ottoway +3
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  7. High-resolution mapping of RNA structural maturation during Cas9 assembly with ABEL-FRET
    B.-E. Choi, H. Wilson, Q. Wang
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  8. Scaling of structural variability of ecDNA polymer condensates with copy number boosts and stabilises oncogene regulatory contacts
    M. Conte, S. Kundu, S. Guha +1
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  9. Core physical principles of allostery
    Eric Rouviere, Olivier Rivoire, Rama Ranganathan
    Biophysical JournalPeer-reviewedCC BY-NC-ND 4.0Full textBiophysicsHAL
  10. Topologically-based parameter inference for agent-based model selection from spatiotemporal cellular data
    Alyssa R. Wenzel, Patrick M. Haughey, Kyle C. Nguyen +3
    PLOS Computational BiologyPeer-reviewedCC BY 4.0Full textBiophysicsPLOS
  11. Physics and Morphology Constrained Quantitative Susceptibility Based Segmentation of Cerebral Veins
    Y. C. Al-Khoury, A. Rezaei, V. Raspa +5
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  12. A mechanobiological computational framework of intestinal healing for sutureless surgical strategies
    s. m. z. s. bukhari, P. Lenarda, R. T. Djoumessi +2
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  13. Lipid-Protein Reciprocal Coupling: A Quantitative Analysis of Membrane Curvature, Architecture, and Protein Association
    A. Sannigrahi, M. S. A. MOMIN, D. Sarkar +2
    bioRxivPreprintCC BY-NDFull textBiophysicsbioRxiv
  14. Self-centering steady-state flows emerge in confined actomyosin networks
    J. Zhao, C. Duclut, A. Singh +12
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  15. Improving Molecular-Morphology Contrastive Pretraining using Deep-Learning-based Morphology Profiles
    Jie Li, Kathryn E. Kirchoff, Dante A. Pertusi +1
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  16. A Minimally Perturbative DARPin Probe for Quantitative Fluorescence Imaging of the Human TCR-CD3 Complex
    M. Pons Romero, B. Kalouskova, J. Kloimwieder +7
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  17. Force generation of cardiomyocytes in engineered environments
    M. Sinha, U. Rölleke, R. Haag +5
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  18. Polymer Polydispersity and Lipid Composition Control Nanoplastic Disassembly in Membranes
    H. Ghermezcheshme, K. Bisht, S. O. Yesylevskyy +1
    bioRxivPreprintCC BY-NDFull textBiophysicsbioRxiv
  19. PFArena: Benchmarking Language Models for Protein Modification
    Yawen Ouyang, Xinbo Zhang, Ziyuan Ma +15
    arXivPreprintCC BY-NC-SA 4.0Full textBiophysicsarXiv
  20. Fast assembly and in vivo coalescence of ParBF biocondensates involved in bacterial DNA partition
    Perrine Revoil, Linda Delimi, Jérôme Rech +4
    Nucleic Acids ResearchPeer-reviewedCC BY-NC 4.0Full textBiophysicsProteomics & metabolomicsHAL
  21. Sporulation modulates viscoelastic development through extracellular matrix restructuring in Bacillus subtilis biofilms
    N. A. Ducharme, J. Larkin
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  22. Designed IDPs phase separate and mix or demix according to sequence designed parameters
    A. Singh, G. L. Dignon
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  23. Nanophotonic DyeCycling delivers single-molecule FRET beyond photobleaching to identify heterogenous dynamics in DNA and protein systems
    B. Vermeer, D. H. Shin, A. Vogel +3
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  24. Folding-Driven Control of the Functional PP1 Complex via Multiscale Modeling
    F. Fontana, B. Bogin, M. Irvin +3
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  25. ProteinJEPA: Latent prediction improves protein language model pretraining
    Dan Ofer, Dafna Shahaf, Michal Linial
    arXivPreprintCC BY-NC-SA 4.0Full textBiophysicsarXiv