Bioinformatics & computational biology
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- RNA3D-Decoy: A Large-Scale Benchmark Dataset of AI-Generated RNA Structure Models for Quality Assessment
- Sketching the SRA: experiment-wide similarity search across 4.8 million metagenomes
- Epidemiological trajectory of Mpox in Brazil, 2022–2025: evidence of geographic consolidation and syndemic burden
- Mechanistic ODE modelling of ovarian tumour microenvironment dynamics under hesperidin exposure
- Spatial and genetic dynamics of Plasmodium falciparum histidine-rich protein2 in sub-Saharan Africa
- Integrative transcriptomics identifies an 18-gene candidate blood-accessible biomarker panel for longitudinal monitoring of spaceflight-induced muscle atrophy
- Earth-observation variables identify temperature-centered protein-family covariation across macroalgal genomes
- TargetAgent: Mathematical AI Co-Scientist for Drug Target Identification
- Debate, Not Voting: Agentic Arbitration over Weak Optical Chemical Structure Recognition Models
- ARMD-Predict: multi-site machine learning to predict antibiotic resistance before culture results
- ExpertTwins: Auditable Long Horizon Scientific Panels through Grounded Expertise
- Protein novelty, sequence similarity, and negative sampling controls reveal benchmark specific discrimination in protein protein interactionprediction
- Revealing pan-cancer clonal niches of T cells from single-cell RNA sequencing using contrastive learning
- Lack of adoption of computational gene-panel-selection tools in targeted spatial transcriptomics
- ALBIS: simulation of multi-resolution and multi-dimensional spatial transcriptomics data
- Pan-cancer estimation of prognostic immune biomarkers from histopathology using artificial intelligence
- Ontology-Driven Annotation of Key Events Enables Transcriptomics-Based Assessment of Adverse Outcome Pathway Networks
- RNA evidence supports clinical stage antibody drug targets in oncology
- VirtualSkin integrates skin-cell identity with intervention-response prediction
- Deep-learning-driven tumor microenvironment profiling improves immunotherapy response prediction
- Do LLM Proposers Improve Budgeted Search for Ionizable Lipids?
- A Time-Resolved Framework for Quantifying Neuronal Network State Transitions
- Linear Fitness Subspace in Protein Language Models Enables Sample-Efficient Directed Evolution
- PertMind: Eliciting Emergent Biological Reasoning in LLM via Reinforcement Learning on Cellular Perturbation Data
- Beyond Scaffold Splits: Structural-Frontier Evaluation Reveals Hidden Failures in ADMET Models