Bioinformatics & computational biology
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- High-performance xenograft read-sorting for DNA methylation analysis
- Neural Petri flows for chemical reactions
- GLARE: Genomic Language model for Automated Repetitive Element classification
- Perturb-Seqr: Signature Search Engine Integrating Connectivity Mapping Resources
- GenDiMug: a generic inclusive multigraph framework to analyze genomic organizations and -omics data at multiple scales
- A human-in-the-loop approach for faster cell tracking
- CCT2 expression marks a translation-activated state in sporadic ALS motor neurons and is associated with functional decline
- MediNet: simplifying federated and privacy-preserving AI deployment in healthcare
- CardamomOT: A mechanistic optimal transport-based framework for gene regulatory network inference, trajectory reconstruction and generative modeling
- Omics data discovery agents: Agent-supported retrieval, reanalysis, and synthesis of published omics data
- Spatial Transcriptomics As Rasterized Image Tensors (STARIT) characterizes cell states with subcellular molecular heterogeneity
- A Multimodal Machine Learning Framework Integrating Genomic, Epidemiological, Environmental, and Clinical Imaging Data for Accelerated Measles Detection and Transmission Inference
- A split-control criterion for few-shot adaptation in single-cell perturbation prediction
- Optimizing copy number profiles for tumor cell phylogeny inference from low-coverage single-cell sequencing data
- Efficient approximate Bayesian inference for large, heterogeneous biological datasets
- Surrogate variables and the risk of overfitting in neuropsychiatric gene expression analyses
- scGSCA: gene-set differential co-expression analysis for single-cell RNA sequencing data
- Identifiability of a linear dynamical reaction-diffusion system with directed interactions from the second-order statistics of a single snapshot
- CLARA: Compound Library Active Learning with Reasoning Agents
- Structure-Based Drug Design of Novel Inhibitors Targeting the Thiamine Biosynthesis Pathway in Bacteria
- Probing isn't Causality in Molecular Models
- UPLiFT: Uncertainty Parameterized Activation for Lightweight Fine-Tuning
- Application of Bayesian-Derived Gene Interaction Network and Subnetwork for Classification of Idiopathic Parkinson Disease with Biomarkers
- Stochastic evolutionary dynamics in structured populations: Network degree governs evolutionary stability
- Characterisation of Genetically-Derived Patient Clusters Highlights Genetic Heterogeneity of Inflammatory Bowel Disease