Bioinformatics & computational biology
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- A public-data reproducibility benchmark of a 2.5-D U-Net with a slice-level topology term for type-B aortic dissection segmentation
- PatientPheX: A Full-Text Biomedical Corpus for Patient-Specific Phenotype Information Extraction
- From Closed-Set Annotation to In-Context Discovery: Biologically Grounded LLMs for Cellular Profiling
- Comparison of Total X-Ray Energy Absorbed by Fibroglandular Tissue and its Mass Derived from Full Field Digital Mammography and Digital Breast Tomosynthesis
- SVC: A Vision Transformer-based Spatially and Virtually Embedded Cell Model for Deciphering Subcellular Spatial Transcriptomic Heterogeneity
- FERDINAND: An Open Framework for Download and AI-ready Preprocessing of IMPC 2D Radiographs
- Evidence-resolved benchmarks separate biological context recognition from direct-partner specificity in protein interaction models
- Limits of marker information transfer]{Limits of marker information transfer in cross-panel cytometry imputation
- Bayesian phylogenetics with incomplete lineage tracing data
- Decomposing scanner batch effects and their impact on pathology foundation models
- DiffRhyShiny: A Benchmarking-Informed Platform for Differential Rhythmicity Analysis with Dependence-Aware Evidence Integration
- DNA-LLM2Vec: Architecture-Aware Task-Conditioned Adaptation of Decoder DNA Foundation Models
- E3 Ligase Ligandalyzer: A Structure-First, Ligand-Centric Platform for E3 Ligase Recruiter Selection
- Computational Prediction of Recombinant Expression Efficiency for Industrial Enzymes: An Integrated Co-Translational Sequence Analysis Platform
- CircuitATLAS: Agentic reasoning over a systems neuroscience knowledge graph for target discovery in circuitopathies
- Many Brains, One Geometry: A Shared Visual-Semantic Space for Cross-Dataset fMRI Decoding
- FaceKit: a Toolkit for Interpretable Facial Phenotyping, Synthetic Image Generation and Privacy Analysis in Rare Diseases
- THz Spectroscopy of Urine Vapors from Patients with Prostate Cancer and Benign Prostatic Hyperplasia: A Critical Review and Statistical Reanalysis
- PhageHost-GNN: novelty-aware and locally adaptable strain-level Klebsiella-phage prediction
- Exploiting Low-Rank Structure in Genomic Relationship Matrices for Computationally Efficient Optimum Contribution Selection
- A mathematical model of the HPA axis demonstrates bifurcations under varying stress and systemic conditions
- In silico subtractive genomics and reverse vaccinology approach reveal outer membrane proteins OMP47 and LptD as dual-purpose drug and vaccine targets in Pasteurella multocida Pm70
- DEPICT enables sample-centric therapeutic prioritization across evolving and spatially heterogeneous tumor states
- Error correction of SARS-CoV-2 genomic sequences using a phylogenetic prior
- Exploration of ligand (un)binding trajectories with Rosetta