Bioinformatics & computational biology
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- From Metabolite to Signalling: Evolutionary Assembly of the Glutamatergic System Across Metazoans
- Empirical Geometry-Guided Modeling Enables Robust, High-Throughput Collagen Structure Prediction
- EMAP-SSN: An Embedding- and Multiple-Alignment-Integrated Sequence Similarity Network Platform for Interactive Exploration of Protein Sequence Space
- Agentic BAIM-LLM Evaluation (ABLE): Benchmarking LLM Use of Protein Design Tools
- A Network-Structured Bayesian Hierarchical Model for Sparse Mutation-Drug Response Associations: Application to Cancer Pharmacogenomics
- Integrating Genomic Annotations and Traits Dependencies for single-nucleotide polymorphisms Prioritization with Causal Concept Bottleneck Models
- GOlien tool: fast and scalable GO term annotation of proteins using a Shannon-entropy k-mer model
- spaCraft: calibrated power analysis and sample-size planning for multi-sample spatial transcriptomics
- Reference-guided pseudotime inference across species and biological contexts
- dictyExpress: an integrated browser for bulk and single-cell Dictyostelium transcriptomics
- Whole genome similarity provides a rapid, robust framework for classification of fungal taxa from the genus rank to intraspecies variants
- Cell Painting-Based Tool for the Risk Assessment of Mammary Carcinogens and Endocrine Disruptors
- Novel Target Combinations in Lung Squamous Cell Carcinoma proposed by the Emet AI Research Environment and supported by discovery stage experimentation
- Scaling Quantum Optimisation Beyond Hardware Limits for Real-World Scientific Workloads: Genome Assembly on Current Quantum Hardware
- End-to-end plaque counting and virus titration from laboratory plate images with deep learning
- Integrated in silico identification of fungal-derived dual-target inhibitors for anti-schistosomal drug discovery
- scFLAME: a unified generative model for interpretable clustering, hierarchical structure discovery and marker-gene identification in single-cell RNA-seq data
- AtlasFold: Protein structure prediction with metagenomic-scale language models
- A Generalizable Feature Extractor for Alzheimer's-Related Brain MRI Tasks
- Simulation-free Unbalanced Dynamic Optimal Transport with General Growth Penalty
- bioq: a unified, agent-native command-line interface to a fleet of AI drug-discovery methods
- A Transferable Genomic Language Model Framework for Fungal Gene Essentiality Prediction
- NANOCUTSIGHT: A NANOPORE-SEQUENCING APPROACH AND ANALYSIS PIPELINE TO ASSESS GENOME EDITING EFFICACY IN VARIOUS CELL POPULATIONS
- Atlas-scale single-cell analysis beyond in-memory paradigm with scAtlasPy
- CellART: a unified framework for extracting single-cell information from high-resolution spatial transcriptomics