Bioinformatics & computational biology
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- labapi: a Python object model for the LabArchives electronic lab notebook
- ReTIF: Granularity-Aware Multitask Interaction Routing for RNA-Compound Interaction Prediction and Binding-Site Localization
- From code to natural language: MErlin - a multiomics toolkit for bacterial epigenomics delivered as Claude agent skill.
- gVCF2CNV: a scalable pipeline for CNV detection from whole-genome sequencing data
- PromptBio: An Agentic Platform for End-to-End Computational Biomedical Research
- OmniSyn unifies target-aware molecular generation and optimization within a synthesis-native LLM framework across the human proteome
- Transcriptome profiling identifies the chromatoid body as a dynamic center for RNA surveillance and transcript sorting during spermatogenesis
- Hypoxia Induced Modulation of Cellular and in vivo uptake of DNA nanocage implications in therapeutics
- Ensemble tests mask missing dynamics in protein conformational generators
- BAGEL-CAR: Reflections on the Bits to Binders Competition
- When DL-Based Prescreening Meets Synthon-Based Docking: Target-Adapting PharmacoNet via MEL-Steered Correction
- Evaluating performance bias in face-to-BMI vision transformer models across diverse human populations
- Experimental and In Silico Analysis of the Structural Dynamics of Dengue NS2B-NS3 Protease
- Self-Supervised Pretraining of Molecular Graph Encoders with LeJEPA
- Bravais Lattice Sampling: Geometry-Guided Sparse Probing for Connected-Component Detection in 3D Discretized Spaces
- Sparse concept attribution for histomorphological hypothesis generation from whole-slide classifiers
- SurfSpec: Enhancing Off-Target-Agnostic Specificity by Bounding Pocket-Ligand Geometric Mismatch
- An adaptive time-tree transition kernel for Bayesian phylogenetic inference
- Accurate MAG reconstruction from a complex soil microbiome through combined short- and HiFi long-reads metagenomics
- SatoyamaCT: A Multi-Axis Night-IR Camera-Trap Benchmark for Monitoring Crop-Damaging Wildlife in Japanese Agroforestry
- Towards Trustworthy Biological Alignment in TabPFN-Probed Pathology Foundation Models
- CrossScale-GLIO: Topology-Preserving Vision-Language Alignment of MRI and Whole-Slide Histopathology for Diffuse Glioma
- Spatial-Molecular Information Analysis Based on Histopathological Geometry: KL-Divergence Decomposition of Cell Distribution and Location-Dependent Expression States in PD-1 Immunohistochemistry
- BananaVLM: A Domain-Adapted Vision Language Model for Banana Crop Disease Diagnosis
- Correlation-Guided Flow Matching with Annealed Masking for Spatial Transcriptomics Generation