Bioinformatics & computational biology
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- Comprehensive Analysis of the AP2/ERF Transcription Factor Family in Schisandra chinensis and Its Implications for secondary metabolism
- PDI-Spot: A Robust Representation Learning Framework for Identifying Energetic Hotspots in Protein–DNA Complexes
- Duration-Aware World Models for Sleep Staging with Dwell-Time Constraints
- napari-TurboBox: Interactive Multi-Viewer Bounding Box Annotation for AI-Guided Volumetric Bioimaging
- Separating mixtures of single-fiber orientation distributions for increased sensitivity to crossing white matter fibers
- How large an effect would we have seen? Positive controls, detection floors and dataset pitfalls in scalp-EEG speech decoding
- Sparse Contextual Coupling Reshapes Diffusion Geometry in Multilayer Hypergraphs
- Predicting Unseen Scientific Interactions: Conditional Flow Models Hallucinate Non-Additive Effects
- Feasibility of a Patient-Specific Digital Twin for Ventriculoperitoneal Shunt Trajectory Planning
- ProtModernBERT: Compute-Efficient Protein Language Modeling
- Structure Before Intelligence: Gating What Agentic Scientific Workflows Release
- Stochastic partial differential equation model for environmental DNA dynamics in river environments
- Maximum likelihood, neural networks and posterior mean for inferring fractional Brownian motion parameters
- Scan-Coil Delay Causes Anisotropic Signal Loss in Fast 4D-STEM
- Bypassing Current Biosecurity Screens with AI Designed Proteins and Closing the Gap with Edge-AI Functional Screening
- A data model for longitudinal multi-modal biomedical cohorts
- A Multidimensional Arithmetical Ontology for High-Parameter Cytometry: Gaussian Primes and Cryptographic Hashing for Cell Population Standardization
- GlyEnzEA: reaction-informed enrichment of enzyme-centered glycan sets from glycomics data
- ALLCAPS: a scalable and accurate deep-learning method for in silico pneumococcal serotyping
- PHANES: an integrated resource of protein features for the human proteome
- XplainTDA: Explaining the topological structure of single-cell multi-omics data through perturbation
- Hybrid Semantic-Lexical Retrieval for Source-to-CDE Mapping in the NCI caDSR
- multiomeR: a pipeline for reproducible analysis of large-scale single-nucleus Epi Multiome datasets
- ChEBI-N - Enrichment Analysis with the ChEBI Ontology
- geoGraph: Connectivity modelling across geographic space with hexagonal discrete global grids